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Supercomputing for Molecular Dynamics Simulations
Handling Multi-Trillion Particles in Nanofluidics
Taschenbuch von Alexander Heinecke (u. a.)
Sprache: Englisch

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Beschreibung
This work presents modern implementations of relevant molecular dynamics algorithms using ls1 mardyn, a simulation program for engineering applications. The text focuses strictly on HPC-related aspects, covering implementation on HPC architectures, taking Intel Xeon and Intel Xeon Phi clusters as representatives of current platforms. The work describes distributed and shared-memory parallelization on these platforms, including load balancing, with a particular focus on the efficient implementation of the compute kernels. The text also discusses the software-architecture of the resulting code.
This work presents modern implementations of relevant molecular dynamics algorithms using ls1 mardyn, a simulation program for engineering applications. The text focuses strictly on HPC-related aspects, covering implementation on HPC architectures, taking Intel Xeon and Intel Xeon Phi clusters as representatives of current platforms. The work describes distributed and shared-memory parallelization on these platforms, including load balancing, with a particular focus on the efficient implementation of the compute kernels. The text also discusses the software-architecture of the resulting code.
Zusammenfassung

Describes the state-of-the-art algorithms and implementations essential for molecular simulation in chemical engineering

Includes high-performance implementations of MD algorithms on current HPC systems covering shared-memory, distributed-memory parallelization and vectorization

Presents a special focus on hybrid systems using Intel Xeon processors and Intel Xeon Phi coprocessors

Includes supplementary material: [...]

Inhaltsverzeichnis

Introduction.- Molecular Dynamics Simulation.- Parallelization of MD Algorithms and Load Balancing.- Efficient Implementation of the Force Calculation in MD Simulations.- Experiments.- Conclusion.

Details
Erscheinungsjahr: 2015
Genre: Informatik
Rubrik: Naturwissenschaften & Technik
Medium: Taschenbuch
Reihe: SpringerBriefs in Computer Science
Inhalt: x
76 S.
22 s/w Illustr.
13 farbige Illustr.
76 p. 35 illus.
13 illus. in color.
ISBN-13: 9783319171470
ISBN-10: 331917147X
Sprache: Englisch
Ausstattung / Beilage: Paperback
Einband: Kartoniert / Broschiert
Autor: Heinecke, Alexander
Bungartz, Hans-Joachim
Horsch, Martin
Eckhardt, Wolfgang
Hersteller: Springer Nature Switzerland
Springer International Publishing
Springer International Publishing AG
SpringerBriefs in Computer Science
Maße: 235 x 155 x 5 mm
Von/Mit: Alexander Heinecke (u. a.)
Erscheinungsdatum: 09.04.2015
Gewicht: 0,165 kg
Artikel-ID: 104871754
Zusammenfassung

Describes the state-of-the-art algorithms and implementations essential for molecular simulation in chemical engineering

Includes high-performance implementations of MD algorithms on current HPC systems covering shared-memory, distributed-memory parallelization and vectorization

Presents a special focus on hybrid systems using Intel Xeon processors and Intel Xeon Phi coprocessors

Includes supplementary material: [...]

Inhaltsverzeichnis

Introduction.- Molecular Dynamics Simulation.- Parallelization of MD Algorithms and Load Balancing.- Efficient Implementation of the Force Calculation in MD Simulations.- Experiments.- Conclusion.

Details
Erscheinungsjahr: 2015
Genre: Informatik
Rubrik: Naturwissenschaften & Technik
Medium: Taschenbuch
Reihe: SpringerBriefs in Computer Science
Inhalt: x
76 S.
22 s/w Illustr.
13 farbige Illustr.
76 p. 35 illus.
13 illus. in color.
ISBN-13: 9783319171470
ISBN-10: 331917147X
Sprache: Englisch
Ausstattung / Beilage: Paperback
Einband: Kartoniert / Broschiert
Autor: Heinecke, Alexander
Bungartz, Hans-Joachim
Horsch, Martin
Eckhardt, Wolfgang
Hersteller: Springer Nature Switzerland
Springer International Publishing
Springer International Publishing AG
SpringerBriefs in Computer Science
Maße: 235 x 155 x 5 mm
Von/Mit: Alexander Heinecke (u. a.)
Erscheinungsdatum: 09.04.2015
Gewicht: 0,165 kg
Artikel-ID: 104871754
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