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Beschreibung
A collection of powerful new techniques for oligonucleotide synthesis and for the use of modified oligonucleotides in biotechnology. Among the protocol highlights are a novel two-step process that yields a high purity, less costly, DNA, the synthesis of phosphorothioates using new sulfur transfer agents, the synthesis of LNA, peptide conjugation methods to improve cellular delivery and cell-specific targeting, and triple helix formation. The applications include using molecular beacons to monitor the PCR amplification process, nuclease footprinting to study the sequence-selective binding of small molecules of DNA, nucleic acid libraries, and the use of small interference RNA (siRNA) as an inhibitor of gene expression.
A collection of powerful new techniques for oligonucleotide synthesis and for the use of modified oligonucleotides in biotechnology. Among the protocol highlights are a novel two-step process that yields a high purity, less costly, DNA, the synthesis of phosphorothioates using new sulfur transfer agents, the synthesis of LNA, peptide conjugation methods to improve cellular delivery and cell-specific targeting, and triple helix formation. The applications include using molecular beacons to monitor the PCR amplification process, nuclease footprinting to study the sequence-selective binding of small molecules of DNA, nucleic acid libraries, and the use of small interference RNA (siRNA) as an inhibitor of gene expression.
Zusammenfassung
Includes supplementary material: [...]
Inhaltsverzeichnis
Synthesis of DNA Using a New Two-Step Cycle
Douglas J. Dellinger, Jason R. Betley, Tadeusz K. Wyrzykiewicz, and Marvin H. Caruthers
RNA Synthesis Using 2'-O-(Tert-Butyldimethylsilyl) Protection
Brian S. Sproat
RNA Oligonucleotide Synthesis Via 5'-Silyl-2'-Orthoester Chemistry
Stephanie A. Hartsel, David E. Kitchen, Stephen A. Scaringe, and William S. Marshall
Dimethylthiarum Disulfide: New Sulfur Transfer Reagent in Phosphorothioates Oligonucleotide Synthesis
Zhiwei Wang, Quanlai Song, and Yogesh S. Sanghvi
Assay for Evaluating Ribonuclease H-Mediated Degradation of RNA-Antisense Oligonucleotide Duplexes
Annie Galarneau, Kyung-Lyum Min, Maria M. Mangos, and Masad J. Damha
Di- and Oligonucleotide Synthesis Using H-Phosphonate Chemistry
Jacek Stawinski and Roger Strömberg
Solid-Phase Synthesis of Circular Oligonucleotides
Enrique Pedroso, Nuria Escaja, Miriam Frieden, and Anna Grandas
Locked Nucleic Acid Synthesis
Henrik M. Pfundheller, Anders M. Sørensen, Christian Lomholt, Anders M. Johansen, Troels Koch, and Jesper Wengel
Synthesis of DNA Mimics Representing HypNA-pPNA Hetero-oligomers
Vladimir A. Efimov and Oksana G. Chakhmakhcheva
Base-Modified Oligonucleotides With Increased Duplex Stability: Pyrazolo[3,4-d]pyrimidines Replacing Purines
Frank Seela, Yang He, Junlin He, Georg Becher, Rita Kröschel, Matthias Zulauf, and Peter Leonard
Introduction of Hypermodified Nucleotides in RNA
Darrell R. Davis and Ashok C. Bajji
Chemical Methods for Peptide-Oligonucleotide Conjugate Synthesis
Dmitry A. Stetsenko and Michael J. Gait
Biotin-Labeled Oligonucleotides With Extraordinarily Long Tethering Arms
A. Michael Morocho, Valeri Karamyshev, Olga Shcherbinina, and Nikolai Polushin
Universal Labeling Chemistry for Nucleic Acid Detection on DNA Chips
Ali Laayoun,Eloy Bernal-Méndez, Isabelle Sothier, Mitsuharu Kotera, and Alain Troesch
Postsynthetic Functionalization of Triple Helix-Forming Oligonucleotides
Alexandre S. Boutorine, and Jian-Sheng Sun
Fluorescence-Based On-Line Detection as an Analytical Tool in RNA Electrophoresis
Ute Scheffer and Michael Göbel
Design and Optimization of Molecular Beacon Real-Time Polymerase Chain Reaction Assays
Jacqueline A. M. Vet and Salvatore A. E. Marras
High-Throughput Production of Optimized Primers (Fimers) for Whole-Genome Direct Sequencing
Nikolai Polushin, Andrei Malykh, A. Michael Morocho, Alexei Slesarev, and Sergei Kozyavkin
Nonenzymatic Template-Directed RNA Synthesis
Marcus Hey and Michael Göbel
DNAse I Footprinting of Small Molecule Binding Sites on DNA
Christian Bailly, Jérôme Kluza, Christopher Martin, Thomas Ellis, and Michael J. Waring
Gene Targeting Using Peptide Nucleic Acid
Peter E. Nielsen
Nucleic Acid Library Construction Using Synthetic DNA Constructs
Hani S. Zaher and Peter J. Unrau
In Vitro Selection From Combinatorial Nucleic Acid Libraries
Andres Jäschke
In Vitro Selection Procedures for Identifying DNA and RNA Aptamers Targeted to Nucleic Acids and Proteins
Eric Dausse, Christian Cazenave, Bernard Rayner, and Jean-Jacques Toulmé
Short Double-Stranded Ribonucleic Acid as Inhibitor of Gene Expression by the Interference Mechanism
Jean-Rémi Bertrand, Andrei Maksimenko, and Claude Malvy
Index
Douglas J. Dellinger, Jason R. Betley, Tadeusz K. Wyrzykiewicz, and Marvin H. Caruthers
RNA Synthesis Using 2'-O-(Tert-Butyldimethylsilyl) Protection
Brian S. Sproat
RNA Oligonucleotide Synthesis Via 5'-Silyl-2'-Orthoester Chemistry
Stephanie A. Hartsel, David E. Kitchen, Stephen A. Scaringe, and William S. Marshall
Dimethylthiarum Disulfide: New Sulfur Transfer Reagent in Phosphorothioates Oligonucleotide Synthesis
Zhiwei Wang, Quanlai Song, and Yogesh S. Sanghvi
Assay for Evaluating Ribonuclease H-Mediated Degradation of RNA-Antisense Oligonucleotide Duplexes
Annie Galarneau, Kyung-Lyum Min, Maria M. Mangos, and Masad J. Damha
Di- and Oligonucleotide Synthesis Using H-Phosphonate Chemistry
Jacek Stawinski and Roger Strömberg
Solid-Phase Synthesis of Circular Oligonucleotides
Enrique Pedroso, Nuria Escaja, Miriam Frieden, and Anna Grandas
Locked Nucleic Acid Synthesis
Henrik M. Pfundheller, Anders M. Sørensen, Christian Lomholt, Anders M. Johansen, Troels Koch, and Jesper Wengel
Synthesis of DNA Mimics Representing HypNA-pPNA Hetero-oligomers
Vladimir A. Efimov and Oksana G. Chakhmakhcheva
Base-Modified Oligonucleotides With Increased Duplex Stability: Pyrazolo[3,4-d]pyrimidines Replacing Purines
Frank Seela, Yang He, Junlin He, Georg Becher, Rita Kröschel, Matthias Zulauf, and Peter Leonard
Introduction of Hypermodified Nucleotides in RNA
Darrell R. Davis and Ashok C. Bajji
Chemical Methods for Peptide-Oligonucleotide Conjugate Synthesis
Dmitry A. Stetsenko and Michael J. Gait
Biotin-Labeled Oligonucleotides With Extraordinarily Long Tethering Arms
A. Michael Morocho, Valeri Karamyshev, Olga Shcherbinina, and Nikolai Polushin
Universal Labeling Chemistry for Nucleic Acid Detection on DNA Chips
Ali Laayoun,Eloy Bernal-Méndez, Isabelle Sothier, Mitsuharu Kotera, and Alain Troesch
Postsynthetic Functionalization of Triple Helix-Forming Oligonucleotides
Alexandre S. Boutorine, and Jian-Sheng Sun
Fluorescence-Based On-Line Detection as an Analytical Tool in RNA Electrophoresis
Ute Scheffer and Michael Göbel
Design and Optimization of Molecular Beacon Real-Time Polymerase Chain Reaction Assays
Jacqueline A. M. Vet and Salvatore A. E. Marras
High-Throughput Production of Optimized Primers (Fimers) for Whole-Genome Direct Sequencing
Nikolai Polushin, Andrei Malykh, A. Michael Morocho, Alexei Slesarev, and Sergei Kozyavkin
Nonenzymatic Template-Directed RNA Synthesis
Marcus Hey and Michael Göbel
DNAse I Footprinting of Small Molecule Binding Sites on DNA
Christian Bailly, Jérôme Kluza, Christopher Martin, Thomas Ellis, and Michael J. Waring
Gene Targeting Using Peptide Nucleic Acid
Peter E. Nielsen
Nucleic Acid Library Construction Using Synthetic DNA Constructs
Hani S. Zaher and Peter J. Unrau
In Vitro Selection From Combinatorial Nucleic Acid Libraries
Andres Jäschke
In Vitro Selection Procedures for Identifying DNA and RNA Aptamers Targeted to Nucleic Acids and Proteins
Eric Dausse, Christian Cazenave, Bernard Rayner, and Jean-Jacques Toulmé
Short Double-Stranded Ribonucleic Acid as Inhibitor of Gene Expression by the Interference Mechanism
Jean-Rémi Bertrand, Andrei Maksimenko, and Claude Malvy
Index
Details
| Erscheinungsjahr: | 2010 |
|---|---|
| Fachbereich: | Biophysik |
| Genre: | Biologie, Importe |
| Rubrik: | Naturwissenschaften & Technik |
| Medium: | Taschenbuch |
| Inhalt: |
xvi
436 S. 142 s/w Illustr. 436 p. 142 illus. |
| ISBN-13: | 9781617374418 |
| ISBN-10: | 1617374415 |
| Sprache: | Englisch |
| Einband: | Kartoniert / Broschiert |
| Autor: | Herdewijn, Piet |
| Redaktion: | Herdewijn, Piet |
| Herausgeber: | Piet Herdewijn |
| Hersteller: | Humana Press |
| Verantwortliche Person für die EU: | Humana Press in Springer Science + Business Media, Heidelberger Platz 3, D-14197 Berlin, juergen.hartmann@springer.com |
| Maße: | 229 x 152 x 23 mm |
| Von/Mit: | Piet Herdewijn |
| Erscheinungsdatum: | 10.11.2010 |
| Gewicht: | 0,599 kg |