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Numerical Simulation in Molecular Dynamics
Numerics, Algorithms, Parallelization, Applications
Buch von Michael Griebel (u. a.)
Sprache: Englisch

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Beschreibung
Particle models play an important role in many applications in physics, chemistry and biology. They can be studied on the computer with the help of molecular dynamics simulations. This book presents in detail both the necessary numerical methods and techniques (linked-cell method, SPME-method, tree codes, multipole technique) and the theoretical background and foundations. It illustrates the aspects modelling, discretization, algorithms and their parallel implementation with MPI on computer systems with distributed memory. Furthermore, detailed explanations are given to the different steps of numerical simulation, and code examples are provided. With the description of the algorithms and the presentation of the results of various simulations from the areas material science, nanotechnology, biochemistry and astrophysics, the reader of this book will be able to write his own programs for molecular dynamics step by step and to run successful experiments.
Particle models play an important role in many applications in physics, chemistry and biology. They can be studied on the computer with the help of molecular dynamics simulations. This book presents in detail both the necessary numerical methods and techniques (linked-cell method, SPME-method, tree codes, multipole technique) and the theoretical background and foundations. It illustrates the aspects modelling, discretization, algorithms and their parallel implementation with MPI on computer systems with distributed memory. Furthermore, detailed explanations are given to the different steps of numerical simulation, and code examples are provided. With the description of the algorithms and the presentation of the results of various simulations from the areas material science, nanotechnology, biochemistry and astrophysics, the reader of this book will be able to write his own programs for molecular dynamics step by step and to run successful experiments.
Zusammenfassung

Particle models play an important role in many applications in physics, chemistry and biology. These can be studied on the computer with the help of molecular dynamics simulations. This book presents in detail the necessary numerical methods, the theoretical background and foundations and the techniques involved, including linked-cell method, SPME-method, tree codes, amd multipol technique. It illustrates such aspects as modeling, discretization, algorithms and their parallel implementation with MPI on computer systems with distributed memory. The text goes on to offer detailed explanations of the different steps of numerical simulation, providing illustrative code examples. With the description of the algorithms and the presentation of the results of various simulations from fields such as material science, nanotechnology, biochemistry and astrophysics, the reader of this book will learn step by step how to write programs capable of running successful experiments for molecular dynamics.

Inhaltsverzeichnis
Computer Simulation - a Key Technology.- From the Schrödinger Equation to Molecular Dynamics.- The Linked Cell Method for Short-Range Potentials.- Parallelization.- Extensions to More Complex Potentials and Molecules.- Time Integration Methods.- Mesh-Based Methods for Long-Range Potentials.- Tree Algorithms for Long-Range Potentials.- Applications from Biochemistry and Biophysics.- Prospects.
Details
Erscheinungsjahr: 2007
Fachbereich: Arithmetik & Algebra
Genre: Mathematik
Rubrik: Naturwissenschaften & Technik
Medium: Buch
Seiten: 492
Reihe: Texts in Computational Science and Engineering
Inhalt: xii
476 S.
137 s/w Illustr.
43 farbige Illustr.
476 p. 180 illus.
43 illus. in color.
ISBN-13: 9783540680949
ISBN-10: 3540680942
Sprache: Englisch
Herstellernummer: 11944966
Ausstattung / Beilage: HC runder Rücken kaschiert
Einband: Gebunden
Autor: Griebel, Michael
Zumbusch, Gerhard
Knapek, Stephan
Auflage: 2007
Hersteller: Springer-Verlag GmbH
Springer Berlin Heidelberg
Texts in Computational Science and Engineering
Maße: 241 x 160 x 31 mm
Von/Mit: Michael Griebel (u. a.)
Erscheinungsdatum: 09.08.2007
Gewicht: 0,898 kg
preigu-id: 102044812
Zusammenfassung

Particle models play an important role in many applications in physics, chemistry and biology. These can be studied on the computer with the help of molecular dynamics simulations. This book presents in detail the necessary numerical methods, the theoretical background and foundations and the techniques involved, including linked-cell method, SPME-method, tree codes, amd multipol technique. It illustrates such aspects as modeling, discretization, algorithms and their parallel implementation with MPI on computer systems with distributed memory. The text goes on to offer detailed explanations of the different steps of numerical simulation, providing illustrative code examples. With the description of the algorithms and the presentation of the results of various simulations from fields such as material science, nanotechnology, biochemistry and astrophysics, the reader of this book will learn step by step how to write programs capable of running successful experiments for molecular dynamics.

Inhaltsverzeichnis
Computer Simulation - a Key Technology.- From the Schrödinger Equation to Molecular Dynamics.- The Linked Cell Method for Short-Range Potentials.- Parallelization.- Extensions to More Complex Potentials and Molecules.- Time Integration Methods.- Mesh-Based Methods for Long-Range Potentials.- Tree Algorithms for Long-Range Potentials.- Applications from Biochemistry and Biophysics.- Prospects.
Details
Erscheinungsjahr: 2007
Fachbereich: Arithmetik & Algebra
Genre: Mathematik
Rubrik: Naturwissenschaften & Technik
Medium: Buch
Seiten: 492
Reihe: Texts in Computational Science and Engineering
Inhalt: xii
476 S.
137 s/w Illustr.
43 farbige Illustr.
476 p. 180 illus.
43 illus. in color.
ISBN-13: 9783540680949
ISBN-10: 3540680942
Sprache: Englisch
Herstellernummer: 11944966
Ausstattung / Beilage: HC runder Rücken kaschiert
Einband: Gebunden
Autor: Griebel, Michael
Zumbusch, Gerhard
Knapek, Stephan
Auflage: 2007
Hersteller: Springer-Verlag GmbH
Springer Berlin Heidelberg
Texts in Computational Science and Engineering
Maße: 241 x 160 x 31 mm
Von/Mit: Michael Griebel (u. a.)
Erscheinungsdatum: 09.08.2007
Gewicht: 0,898 kg
preigu-id: 102044812
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