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Bioinformatics
A Practical Guide to Next Generation Sequencing Data Analysis
Taschenbuch von Hamid D. Ismail
Sprache: Englisch

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Beschreibung
This book contains the latest material in the subject, covering NGS applications and meeting the requirements of a complete semester course. This book provides both concept and practice to satisfy the exact need of researchers seeking to use NGS data reprocessing, genome assembly, variant discovery, gene profiling, epigenetics, and metagenomics.
This book contains the latest material in the subject, covering NGS applications and meeting the requirements of a complete semester course. This book provides both concept and practice to satisfy the exact need of researchers seeking to use NGS data reprocessing, genome assembly, variant discovery, gene profiling, epigenetics, and metagenomics.
Über den Autor

Hamid D. Ismail received his M.Sc. and Ph.D. in computational science from North Carolina Agricultural and Technical State University (NC A&T), USA, and DVM and B.Sc. from the University of Khartoum, Sudan. He earned several professional certifications including SAS Advanced Programmer and SQL Expert Programmer. Currently he works as a post-doc scholar at Michigan Technological University and adjunct professor of Data Science and Bioinformatics at NC A&T State University. Hamid is a bioinformatician, biologist, data scientist, statistician, and machine learning specialist. He contributed widely to the field of bioinformatics by developing bioinformatics tools and methods for applications of machine learning on genomic data.

Inhaltsverzeichnis

Sequencing and Raw Sequence Data Quality Control, Nucleic acids, Sequencing, Sequencing depth and read quality, FASTQ files, FASTQ read quality assessment, Preprocessing of the FASTQ reads, Mapping of sequence reads to the reference genomes, Introduction to sequence mapping, Read mapping, Read sequence alignment and aligners, Manipulating alignments in SAM/BAM files, Reference-guided genome assembly, De novo Genome Assembly, Introduction to De Novo genome assembly, Examples of De Novo assemblers, Genome Assembly Quality Assessment, Variant Discovery, Introduction to genetic variations, Variant calling programs, Visualizing variants, Variant annotation and prioritization, RNA-seq data analysis, Introduction to RNA-seq, RNA-seq data applications, RNA-seq data analysis workflow, Chromatin Immunoprecipitation sequencing, Introduction to chromatin immunoprecipitation, ChIP sequencing, ChIP-seq analysis workflow, Targeted Gene Metagenomic Data Analysis, Introduction to metagenomics, Analysis workflow, Data Analysis with QIIME2, Shotgun metagenomic data analysis, Introduction, Shotgun metagenomic analysis workflow

Details
Erscheinungsjahr: 2023
Fachbereich: Gentechnologie
Genre: Biologie
Rubrik: Naturwissenschaften & Technik
Medium: Taschenbuch
Seiten: 330
Inhalt: Einband - flex.(Paperback)
ISBN-13: 9781032408910
ISBN-10: 103240891X
Sprache: Englisch
Einband: Kartoniert / Broschiert
Autor: Ismail, Hamid D.
Hersteller: Taylor & Francis Ltd
Maße: 176 x 254 x 19 mm
Von/Mit: Hamid D. Ismail
Erscheinungsdatum: 29.06.2023
Gewicht: 0,712 kg
preigu-id: 126428953
Über den Autor

Hamid D. Ismail received his M.Sc. and Ph.D. in computational science from North Carolina Agricultural and Technical State University (NC A&T), USA, and DVM and B.Sc. from the University of Khartoum, Sudan. He earned several professional certifications including SAS Advanced Programmer and SQL Expert Programmer. Currently he works as a post-doc scholar at Michigan Technological University and adjunct professor of Data Science and Bioinformatics at NC A&T State University. Hamid is a bioinformatician, biologist, data scientist, statistician, and machine learning specialist. He contributed widely to the field of bioinformatics by developing bioinformatics tools and methods for applications of machine learning on genomic data.

Inhaltsverzeichnis

Sequencing and Raw Sequence Data Quality Control, Nucleic acids, Sequencing, Sequencing depth and read quality, FASTQ files, FASTQ read quality assessment, Preprocessing of the FASTQ reads, Mapping of sequence reads to the reference genomes, Introduction to sequence mapping, Read mapping, Read sequence alignment and aligners, Manipulating alignments in SAM/BAM files, Reference-guided genome assembly, De novo Genome Assembly, Introduction to De Novo genome assembly, Examples of De Novo assemblers, Genome Assembly Quality Assessment, Variant Discovery, Introduction to genetic variations, Variant calling programs, Visualizing variants, Variant annotation and prioritization, RNA-seq data analysis, Introduction to RNA-seq, RNA-seq data applications, RNA-seq data analysis workflow, Chromatin Immunoprecipitation sequencing, Introduction to chromatin immunoprecipitation, ChIP sequencing, ChIP-seq analysis workflow, Targeted Gene Metagenomic Data Analysis, Introduction to metagenomics, Analysis workflow, Data Analysis with QIIME2, Shotgun metagenomic data analysis, Introduction, Shotgun metagenomic analysis workflow

Details
Erscheinungsjahr: 2023
Fachbereich: Gentechnologie
Genre: Biologie
Rubrik: Naturwissenschaften & Technik
Medium: Taschenbuch
Seiten: 330
Inhalt: Einband - flex.(Paperback)
ISBN-13: 9781032408910
ISBN-10: 103240891X
Sprache: Englisch
Einband: Kartoniert / Broschiert
Autor: Ismail, Hamid D.
Hersteller: Taylor & Francis Ltd
Maße: 176 x 254 x 19 mm
Von/Mit: Hamid D. Ismail
Erscheinungsdatum: 29.06.2023
Gewicht: 0,712 kg
preigu-id: 126428953
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